BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027G09SP1|AL428786
(695 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 378 e-104
>3x_Contig1361
Length = 8765
Score = 378 bits (187), Expect = e-104
Identities = 318/350 (90%), Gaps = 17/350 (4%)
Strand = Plus / Minus
Query: 3 aaaaaaaaaacacaaaaaggaaaaaaractagatagcggctgcacgacaccacagwtaaw 62
|||||||||||||| | |||||| || |||||||||||||||||||||||||||| |||
Sbjct: 3107 aaaaaaaaaacacagagaggaaagaagactagatagcggctgcacgacaccacagttaat 3048
Query: 63 aagawaccagtcttcaagcaaattaaaaaatgtcagttattcctagacccatactcsgca 122
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 3047 aagataccagtcttcaagcaaattaaaaaatgtca-ttattcctagacccatactcggca 2989
Query: 123 caaaccgwtgatgaagaaragattgggattgccaaggttcaattcagactgcgatgamca 182
||||||| |||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct: 2988 caaaccgttgatgaagaaaagattgggattgccaaggttcaattc-ga-tgcgatgaaca 2931
Query: 183 caacgttcaatgacaatgttacgtgcacgtgtcttggagaagtcgctaattaccgcatga 242
||||||||||| |||||||||| | ||||||||| ||||||| || ||||||||||
Sbjct: 2930 caacgttcaat-acaatgttac--ggacgtgtctt-gagaagt--gta--taccgcatga 2879
Query: 243 cgagtacggtgaatccgatttgaacaaggcgagaaatcgtgctgtatcgaccagatgcgt 302
||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct: 2878 cgagtacggtgaatccgatttgaacaagg-gagaaat-gtgctgtatcga-tagatgcgt 2822
Query: 303 tgccaaratccatcttgagcaataggctaactaggtgcggtttgcccagt 352
|||||| |||||| |||||||||||||||| |||||| ||||||||||||
Sbjct: 2821 tgccaagatccat-ttgagcaataggctaa-taggtg-ggtttgcccagt 2775
Score = 333 bits (165), Expect = 3e-91
Identities = 220/240 (91%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 420 gataactgccaagacaataacgactcctataccgactagtaaaraggasgagcaacaatg 479
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 2719 gataactgccaagacaataacgactcctataccgactagtaaagaggaggagcaacaatg 2660
Query: 480 agcttgctagggatgtgaatcgtgtgtatatmmatgamtagcmgtagagtaagtaagtaa 539
|| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 2659 ag-ttgctagggatgtgaatcgtgtgtatataaatgaatag-agtagagtaagtaagtaa 2602
Query: 540 tsaacgaaagggtaaaccaacgcacagcagtcgaccataaaatagacattttttttggcg 599
| ||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 2601 tgaacgaaagggtaaaccaacgc----cacgtgaccataaaatagacattttttttggag 2546
Query: 600 aacgatgaaaasyatgcacttattcgcttacccggatgttaacatccgggtaacgaataa 659
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2545 aacgatgaaaagtatgcacttattcg-ttacccggatgttaacatccgggtaacgaataa 2487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9083
Number of Sequences: 1807
Number of extensions: 9083
Number of successful extensions: 213
Number of sequences better than 1.0e-20: 1
length of query: 695
length of database: 10,358,551
effective HSP length: 16
effective length of query: 679
effective length of database: 10,329,639
effective search space: 7013824881
effective search space used: 7013824881
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.4 bits)